J4_1FKA_006
3D structure
- PDB id
- 1FKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGUAACG*UCCCAUCAG*CGACGACGGGUAG*CC
- Length
- 32 nucleotides
- Bulged bases
- 1FKA|1|A|A|110, 1FKA|1|A|G|111, 1FKA|1|A|U|112, 1FKA|1|A|A|113, 1FKA|1|A|C|115, 1FKA|1|A|A|239, 1FKA|1|A|U|240, 1FKA|1|A|C|241, 1FKA|1|A|A|242, 1FKA|1|A|G|274, 1FKA|1|A|A|275, 1FKA|1|A|C|276, 1FKA|1|A|G|277, 1FKA|1|A|A|278, 1FKA|1|A|C|279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1FKA|1|A|G|109
1FKA|1|A|A|110
1FKA|1|A|G|111
1FKA|1|A|U|112
1FKA|1|A|A|113
1FKA|1|A|A|114
1FKA|1|A|C|115
1FKA|1|A|G|116
*
1FKA|1|A|U|235
1FKA|1|A|C|236
1FKA|1|A|C|237
1FKA|1|A|C|238
1FKA|1|A|A|239
1FKA|1|A|U|240
1FKA|1|A|C|241
1FKA|1|A|A|242
1FKA|1|A|G|243
*
1FKA|1|A|C|273
1FKA|1|A|G|274
1FKA|1|A|A|275
1FKA|1|A|C|276
1FKA|1|A|G|277
1FKA|1|A|A|278
1FKA|1|A|C|279
1FKA|1|A|G|280
1FKA|1|A|G|281
1FKA|1|A|G|282
1FKA|1|A|U|283
1FKA|1|A|A|284
1FKA|1|A|G|285
*
1FKA|1|A|C|307
1FKA|1|A|C|308
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain P
- 30S RIBOSOMAL PROTEIN S16
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: