Loop J4_1FKA

3D structure

PDB id: 1FKA (explore in PDB, NAKB, or RNA 3D Hub)
Description: STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: CGUAAAGGG*CGAAAGC*GCCCUAAACGAUGCGC*GCGCCG
Length: 38 nucleotides
Bulged bases: 1FKA|1|A|A|557, 1FKA|1|A|A|558, 1FKA|1|A|G|559, 1FKA|1|A|G|560, 1FKA|1|A|G|749, 1FKA|1|A|A|750, 1FKA|1|A|A|751, 1FKA|1|A|A|752, 1FKA|1|A|A|799, 1FKA|1|A|A|800, 1FKA|1|A|C|801, 1FKA|1|A|G|802, 1FKA|1|A|A|803, 1FKA|1|A|U|804, 1FKA|1|A|G|805, 1FKA|1|A|G|856, 1FKA|1|A|C|857, 1FKA|1|A|C|858
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1FKA|1|A|C|553
1FKA|1|A|G|554
1FKA|1|A|U|555
1FKA|1|A|A|556
1FKA|1|A|A|557
1FKA|1|A|A|558
1FKA|1|A|G|559
1FKA|1|A|G|560
1FKA|1|A|G|561
*
1FKA|1|A|C|748
1FKA|1|A|G|749
1FKA|1|A|A|750
1FKA|1|A|A|751
1FKA|1|A|A|752
1FKA|1|A|G|753
1FKA|1|A|C|754
*
1FKA|1|A|G|793
1FKA|1|A|C|794
1FKA|1|A|C|795
1FKA|1|A|C|796
1FKA|1|A|U|797
1FKA|1|A|A|798
1FKA|1|A|A|799
1FKA|1|A|A|800
1FKA|1|A|C|801
1FKA|1|A|G|802
1FKA|1|A|A|803
1FKA|1|A|U|804
1FKA|1|A|G|805
1FKA|1|A|C|806
1FKA|1|A|G|807
1FKA|1|A|C|808
*
1FKA|1|A|G|854
1FKA|1|A|C|855
1FKA|1|A|G|856
1FKA|1|A|C|857
1FKA|1|A|C|858
1FKA|1|A|G|859

Current chains

Chain A: 16S RIBOSOMAL RNA

Nearby chains

Chain E: 30S RIBOSOMAL PROTEIN S5
Chain H: 30S RIBOSOMAL PROTEIN S8
Chain L: 30S RIBOSOMAL PROTEIN S12
Chain O: 30S RIBOSOMAL PROTEIN S15
Chain Q: 30S RIBOSOMAL PROTEIN S17

J4_1FKA_008