J4_1I9V_001

3D structure

PDB id

1I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUAG*CGC*GAGGUCC*GA

Length

16 nucleotides

Bulged bases

1I9V|1|A|U|8, 1I9V|1|A|U|47, 1I9V|1|A|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1I9V_001 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.1512

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

1I9V|1|A|U|7
1I9V|1|A|U|8
1I9V|1|A|A|9
1I9V|1|A|G|10
*
1I9V|1|A|C|25
1I9V|1|A|G|26
1I9V|1|A|C|27
*
1I9V|1|A|G|43
1I9V|1|A|A|44
1I9V|1|A|G|45
1I9V|1|A|G|46
1I9V|1|A|U|47
1I9V|1|A|C|48
1I9V|1|A|C|49
*
1I9V|1|A|G|65
1I9V|1|A|A|66

Current chains

Chain A

PHENYLALANINE TRANSFER RNA

Nearby chains