J4_1IL2_001
3D structure
- PDB id
- 1IL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAG*UGG*CAGAU(5MC)*GU
- Length
- 15 nucleotides
- Bulged bases
- 1IL2|1|C|U|908, 1IL2|1|C|U|948
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
1IL2|1|C|A|907
1IL2|1|C|U|908
1IL2|1|C|A|909
1IL2|1|C|G|910
*
1IL2|1|C|U|925
1IL2|1|C|G|926
1IL2|1|C|G|927
*
1IL2|1|C|C|943
1IL2|1|C|A|944
1IL2|1|C|G|945
1IL2|1|C|A|946
1IL2|1|C|U|948
1IL2|1|C|5MC|949
*
1IL2|1|C|G|965
1IL2|1|C|U|966
Current chains
- Chain C
- ASPARTYL TRANSFER RNA
Nearby chains
- Chain A
- ASPARTYL-TRNA SYNTHETASE
- Chain B
- ASPARTYL-TRNA SYNTHETASE
Coloring options: