J4_1IVS_001

3D structure

PDB id

1IVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAG*CGC*GAGGUCG*CG

Length

16 nucleotides

Bulged bases

1IVS|1|C|U|908, 1IVS|1|C|U|946, 1IVS|1|C|C|947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1IVS_001 not in the Motif Atlas

Homologous match to J4_1GAX_004

Geometric discrepancy: 0.0952

The information below is about J4_1GAX_004

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

1IVS|1|C|C|907
1IVS|1|C|U|908
1IVS|1|C|A|909
1IVS|1|C|G|910
*
1IVS|1|C|C|924
1IVS|1|C|G|925
1IVS|1|C|C|926
*
1IVS|1|C|G|942
1IVS|1|C|A|943
1IVS|1|C|G|944
1IVS|1|C|G|945
1IVS|1|C|U|946
1IVS|1|C|C|947
1IVS|1|C|G|948
*
1IVS|1|C|C|964
1IVS|1|C|G|965

Current chains

Chain C

tRNA (Val)

Nearby chains

Chain A

Valyl-tRNA synthetase