J4_1JGP_003
3D structure
- PDB id
- 1JGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7 Å
Loop
- Sequence
- A(4SU)AA*UAC*GCUAU(5MC)*GU
- Length
- 15 nucleotides
- Bulged bases
- 1JGP|1|D|U|45
- QA status
- Modified nucleotides: 4SU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1JGP|1|D|A|7
1JGP|1|D|4SU|8
1JGP|1|D|A|9
1JGP|1|D|A|10
*
1JGP|1|D|U|25
1JGP|1|D|A|26
1JGP|1|D|C|27
*
1JGP|1|D|G|43
1JGP|1|D|C|44
1JGP|1|D|U|45
1JGP|1|D|A|46
1JGP|1|D|U|48
1JGP|1|D|5MC|49
*
1JGP|1|D|G|65
1JGP|1|D|U|66
Current chains
- Chain D
- tRNA(Phe)
Nearby chains
No other chains within 10ÅColoring options: