J4_1JZX_002

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1JZX|1|A|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1JZX_002 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.274

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

1JZX|1|A|G|1323
1JZX|1|A|G|1324
1JZX|1|A|U|1325
1JZX|1|A|U|1326
1JZX|1|A|C|1327
*
1JZX|1|A|G|1351
1JZX|1|A|G|1352
1JZX|1|A|A|1353
1JZX|1|A|A|1354
1JZX|1|A|A|1355
1JZX|1|A|G|1356
*
1JZX|1|A|C|1417
1JZX|1|A|C|1418
*
1JZX|1|A|G|1613
1JZX|1|A|C|1614
1JZX|1|A|C|1615
1JZX|1|A|C|1616
1JZX|1|A|G|1617
1JZX|1|A|U|1618
1JZX|1|A|A|1619
1JZX|1|A|C|1620

Current chains

Chain A

23S rRNA

Nearby chains