J4_1JZZ_002

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

1JZZ|1|A|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1JZZ_002 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.2748

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

1JZZ|1|A|G|1323
1JZZ|1|A|G|1324
1JZZ|1|A|U|1325
1JZZ|1|A|U|1326
1JZZ|1|A|C|1327
*
1JZZ|1|A|G|1351
1JZZ|1|A|G|1352
1JZZ|1|A|A|1353
1JZZ|1|A|A|1354
1JZZ|1|A|A|1355
1JZZ|1|A|G|1356
*
1JZZ|1|A|C|1417
1JZZ|1|A|C|1418
*
1JZZ|1|A|G|1613
1JZZ|1|A|C|1614
1JZZ|1|A|C|1615
1JZZ|1|A|C|1616
1JZZ|1|A|G|1617
1JZZ|1|A|U|1618
1JZZ|1|A|A|1619
1JZZ|1|A|C|1620

Current chains

Chain A

23S rRNA

Nearby chains