J4_1JZZ_003

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AUG*UUGGUACGCUCAAGGGCGA*UCACAUGCCUCAGACGUAUCGGGAG*CGAAGU

Length

53 nucleotides

Bulged bases

1JZZ|1|A|U|1459, 1JZZ|1|A|C|1489, 1JZZ|1|A|A|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZZ|1|A|A|1458
1JZZ|1|A|U|1459
1JZZ|1|A|G|1460
*
1JZZ|1|A|U|1481
1JZZ|1|A|U|1482
1JZZ|1|A|G|1483
1JZZ|1|A|G|1484
1JZZ|1|A|U|1485
1JZZ|1|A|A|1486
1JZZ|1|A|C|1487
1JZZ|1|A|G|1488
1JZZ|1|A|C|1489
1JZZ|1|A|U|1490
1JZZ|1|A|C|1491
1JZZ|1|A|A|1492
1JZZ|1|A|A|1493
1JZZ|1|A|G|1494
1JZZ|1|A|G|1495
1JZZ|1|A|G|1496
1JZZ|1|A|C|1497
1JZZ|1|A|G|1498
1JZZ|1|A|A|1499
*
1JZZ|1|A|U|1521
1JZZ|1|A|C|1522
1JZZ|1|A|A|1523
1JZZ|1|A|C|1524
1JZZ|1|A|A|1525
1JZZ|1|A|U|1526
1JZZ|1|A|G|1527
1JZZ|1|A|C|1528
1JZZ|1|A|C|1529
1JZZ|1|A|U|1530
1JZZ|1|A|C|1531
1JZZ|1|A|A|1532
1JZZ|1|A|G|1533
1JZZ|1|A|A|1534
1JZZ|1|A|C|1535
1JZZ|1|A|G|1536
1JZZ|1|A|U|1537
1JZZ|1|A|A|1538
1JZZ|1|A|U|1539
1JZZ|1|A|C|1540
1JZZ|1|A|G|1541
1JZZ|1|A|G|1542
1JZZ|1|A|G|1543
1JZZ|1|A|A|1544
1JZZ|1|A|G|1545
*
1JZZ|1|A|C|1558
1JZZ|1|A|G|1559
1JZZ|1|A|A|1560
1JZZ|1|A|A|1561
1JZZ|1|A|G|1562
1JZZ|1|A|U|1563

Current chains

Chain A

23S rRNA

Nearby chains