J4_1K01_005

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

1K01|1|A|A|2265, 1K01|1|A|A|2267, 1K01|1|A|U|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|C|2264
1K01|1|A|A|2265
1K01|1|A|A|2266
1K01|1|A|A|2267
1K01|1|A|G|2268
1K01|1|A|G|2269
*
1K01|1|A|C|2321
1K01|1|A|U|2322
1K01|1|A|U|2323
1K01|1|A|G|2324
1K01|1|A|A|2325
1K01|1|A|C|2326
*
1K01|1|A|G|2349
1K01|1|A|G|2350
1K01|1|A|G|2351
*
1K01|1|A|C|2360
1K01|1|A|G|2361
1K01|1|A|G|2362

Current chains

Chain A

23S rRNA

Nearby chains