J4_1K01_007

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUG*UUGGUACGCUCAAGGGCG*CACAUGCCUCAGACGUAUCGGGAG*CGAAGU

Length

51 nucleotides

Bulged bases

1K01|1|A|U|1459, 1K01|1|A|C|1489, 1K01|1|A|A|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|A|1458
1K01|1|A|U|1459
1K01|1|A|G|1460
*
1K01|1|A|U|1481
1K01|1|A|U|1482
1K01|1|A|G|1483
1K01|1|A|G|1484
1K01|1|A|U|1485
1K01|1|A|A|1486
1K01|1|A|C|1487
1K01|1|A|G|1488
1K01|1|A|C|1489
1K01|1|A|U|1490
1K01|1|A|C|1491
1K01|1|A|A|1492
1K01|1|A|A|1493
1K01|1|A|G|1494
1K01|1|A|G|1495
1K01|1|A|G|1496
1K01|1|A|C|1497
1K01|1|A|G|1498
*
1K01|1|A|C|1522
1K01|1|A|A|1523
1K01|1|A|C|1524
1K01|1|A|A|1525
1K01|1|A|U|1526
1K01|1|A|G|1527
1K01|1|A|C|1528
1K01|1|A|C|1529
1K01|1|A|U|1530
1K01|1|A|C|1531
1K01|1|A|A|1532
1K01|1|A|G|1533
1K01|1|A|A|1534
1K01|1|A|C|1535
1K01|1|A|G|1536
1K01|1|A|U|1537
1K01|1|A|A|1538
1K01|1|A|U|1539
1K01|1|A|C|1540
1K01|1|A|G|1541
1K01|1|A|G|1542
1K01|1|A|G|1543
1K01|1|A|A|1544
1K01|1|A|G|1545
*
1K01|1|A|C|1558
1K01|1|A|G|1559
1K01|1|A|A|1560
1K01|1|A|A|1561
1K01|1|A|G|1562
1K01|1|A|U|1563

Current chains

Chain A

23S rRNA

Nearby chains