J4_1KH6_001

3D structure

PDB id

1KH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation Initiation.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAC*GA*(5BU)(5BU)G*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5BU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_47478.1

Basepair signature

cWW-F-cWW-cWS-cHW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1KH6|1|A|G|5
1KH6|1|A|A|6
1KH6|1|A|A|7
1KH6|1|A|C|8
*
1KH6|1|A|G|23
1KH6|1|A|A|24
*
1KH6|1|A|5BU|37
1KH6|1|A|5BU|38
1KH6|1|A|G|39
*
1KH6|1|A|C|48
1KH6|1|A|C|49

Current chains

Chain A

JIIIabc

Nearby chains