J4_1KQS_002

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1KQS_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.026

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1KQS|1|0|A|302
1KQS|1|0|C|303
1KQS|1|0|G|304
1KQS|1|0|A|305
1KQS|1|0|A|306
1KQS|1|0|G|307
*
1KQS|1|0|C|323
1KQS|1|0|G|324
1KQS|1|0|U|325
1KQS|1|0|G|326
*
1KQS|1|0|C|330
1KQS|1|0|A|331
1KQS|1|0|G|332
*
1KQS|1|0|C|344
1KQS|1|0|G|345
1KQS|1|0|U|346
1KQS|1|0|A|347
1KQS|1|0|C|348
1KQS|1|0|U|349

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain S

RIBOSOMAL PROTEIN L24