J4_1M1K_003

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGCGAUAG*CG*CUGUC*GG

Length

18 nucleotides

Bulged bases

1M1K|1|A|G|1378, 1M1K|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M1K|1|A|C|1374
1M1K|1|A|A|1375
1M1K|1|A|G|1376
1M1K|1|A|C|1377
1M1K|1|A|G|1378
1M1K|1|A|A|1379
1M1K|1|A|U|1380
1M1K|1|A|A|1381
1M1K|1|A|G|1382
*
1M1K|1|A|C|1400
1M1K|1|A|G|1401
*
1M1K|1|A|C|1721
1M1K|1|A|U|1722
1M1K|1|A|G|1723
1M1K|1|A|U|1724
1M1K|1|A|C|1725
*
1M1K|1|A|G|2050
1M1K|1|A|G|2051

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E

Chain S

RIBOSOMAL PROTEIN L22

Chain Y

RIBOSOMAL PROTEIN L31E