J4_1M1K_005

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UC*GGUUAG*CC*GUCCGUA

Length

17 nucleotides

Bulged bases

1M1K|1|A|U|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M1K|1|A|U|1419
1M1K|1|A|C|1420
*
1M1K|1|A|G|1444
1M1K|1|A|G|1445
1M1K|1|A|U|1446
1M1K|1|A|U|1447
1M1K|1|A|A|1448
1M1K|1|A|G|1449
*
1M1K|1|A|C|1513
1M1K|1|A|C|1514
*
1M1K|1|A|G|1672
1M1K|1|A|U|1673
1M1K|1|A|C|1674
1M1K|1|A|C|1675
1M1K|1|A|G|1676
1M1K|1|A|U|1677
1M1K|1|A|A|1678

Current chains

Chain A

23S RRNA

Nearby chains

Chain 3

RIBOSOMAL PROTEIN L39E

Chain Q

RIBOSOMAL PROTEIN L19E

Chain T

RIBOSOMAL PROTEIN L23

Chain W

RIBOSOMAL PROTEIN L29