J4_1M1K_008

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1M1K|1|A|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M1K|1|A|C|1889
1M1K|1|A|U|1890
1M1K|1|A|G|1891
*
1M1K|1|A|C|1946
1M1K|1|A|G|1947
*
1M1K|1|A|C|1965
1M1K|1|A|U|1966
1M1K|1|A|U|1967
1M1K|1|A|A|1968
1M1K|1|A|A|1969
1M1K|1|A|G|1970
1M1K|1|A|G|1971
1M1K|1|A|U|1972
1M1K|1|A|A|1973
1M1K|1|A|G|1974
*
1M1K|1|A|U|2008
1M1K|1|A|G|2009
1M1K|1|A|A|2010
1M1K|1|A|A|2011
1M1K|1|A|U|2012
1M1K|1|A|G|2013

Current chains

Chain A

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L37Ae

Chain C

RIBOSOMAL PROTEIN L2