J4_1M1K_009

3D structure

PDB id

1M1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

1M1K|1|A|U|2322, 1M1K|1|A|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1M1K|1|A|C|2319
1M1K|1|A|U|2320
1M1K|1|A|A|2321
1M1K|1|A|U|2322
1M1K|1|A|G|2323
*
1M1K|1|A|U|2377
1M1K|1|A|U|2378
1M1K|1|A|G|2379
1M1K|1|A|A|2380
1M1K|1|A|C|2381
*
1M1K|1|A|G|2407
1M1K|1|A|A|2408
1M1K|1|A|C|2409
*
1M1K|1|A|G|2418
1M1K|1|A|U|2419
1M1K|1|A|G|2420

Current chains

Chain A

23S RRNA

Nearby chains

Chain 4

RIBOSOMAL PROTEIN L44E

Chain O

RIBOSOMAL PROTEIN L18

Chain R

RIBOSOMAL PROTEIN L21E