J4_1MJ1_002

3D structure

PDB id

1MJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

UUA(2MG)*C(M2G)C*GAG(7MG)UC(5MC)*GA

Length

16 nucleotides

Bulged bases

1MJ1|1|D|U|8, 1MJ1|1|D|U|47, 1MJ1|1|D|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1MJ1_002 not in the Motif Atlas

Homologous match to J4_7EQJ_002

Geometric discrepancy: 0.1279

The information below is about J4_7EQJ_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

1MJ1|1|D|U|7
1MJ1|1|D|U|8
1MJ1|1|D|A|9
1MJ1|1|D|2MG|10
*
1MJ1|1|D|C|25
1MJ1|1|D|M2G|26
1MJ1|1|D|C|27
*
1MJ1|1|D|G|43
1MJ1|1|D|A|44
1MJ1|1|D|G|45
1MJ1|1|D|7MG|46
1MJ1|1|D|U|47
1MJ1|1|D|C|48
1MJ1|1|D|5MC|49
*
1MJ1|1|D|G|65
1MJ1|1|D|A|66

Current chains

Chain D

Phe-tRNA

Nearby chains

Chain A

Elongation Factor Tu

Chain O

S12 ribosomal protein

Chain R

helix 69 of 23S rRNA