J4_1NJM_001

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAGU*ACACC*GAA*UGUAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|C|308
1NJM|1|0|G|309
1NJM|1|0|A|310
1NJM|1|0|A|311
1NJM|1|0|G|312
1NJM|1|0|U|313
*
1NJM|1|0|A|326
1NJM|1|0|C|327
1NJM|1|0|A|328
1NJM|1|0|C|329
1NJM|1|0|C|330
*
1NJM|1|0|G|334
1NJM|1|0|A|335
1NJM|1|0|A|336
*
1NJM|1|0|U|348
1NJM|1|0|G|349
1NJM|1|0|U|350
1NJM|1|0|A|351
1NJM|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains