J4_1NJM_005

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUGC*GUUGGU*AUCGGGAG*CGAAGU

Length

24 nucleotides

Bulged bases

1NJM|1|0|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|A|1458
1NJM|1|0|U|1459
1NJM|1|0|G|1460
1NJM|1|0|C|1461
*
1NJM|1|0|G|1480
1NJM|1|0|U|1481
1NJM|1|0|U|1482
1NJM|1|0|G|1483
1NJM|1|0|G|1484
1NJM|1|0|U|1485
*
1NJM|1|0|A|1538
1NJM|1|0|U|1539
1NJM|1|0|C|1540
1NJM|1|0|G|1541
1NJM|1|0|G|1542
1NJM|1|0|G|1543
1NJM|1|0|A|1544
1NJM|1|0|G|1545
*
1NJM|1|0|C|1558
1NJM|1|0|G|1559
1NJM|1|0|A|1560
1NJM|1|0|A|1561
1NJM|1|0|G|1562
1NJM|1|0|U|1563

Current chains

Chain 0

23S ribosomal RNA

Nearby chains