J4_1NJM_007

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

1NJM|1|0|U|1909, 1NJM|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJM_007 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.531

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1NJM|1|0|C|1825
1NJM|1|0|U|1826
1NJM|1|0|G|1827
*
1NJM|1|0|C|1888
1NJM|1|0|G|1889
*
1NJM|1|0|C|1907
1NJM|1|0|C|1908
1NJM|1|0|U|1909
1NJM|1|0|A|1910
1NJM|1|0|A|1911
1NJM|1|0|G|1912
1NJM|1|0|G|1913
1NJM|1|0|U|1914
1NJM|1|0|A|1915
1NJM|1|0|G|1916
*
1NJM|1|0|C|1950
1NJM|1|0|G|1951
1NJM|1|0|A|1952
1NJM|1|0|A|1953
1NJM|1|0|A|1954
1NJM|1|0|G|1955

Current chains

Chain 0

23S ribosomal RNA

Nearby chains