J4_1NJN_002

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAG*CGGAG*CGAGUC*GGCGGCAUUAG

Length

26 nucleotides

Bulged bases

1NJN|1|0|A|648, 1NJN|1|0|A|665, 1NJN|1|0|U|666, 1NJN|1|0|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJN_002 not in the Motif Atlas

Homologous match to J4_7A0S_003

Geometric discrepancy: 0.5702

The information below is about J4_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98739.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

1NJN|1|0|C|611
1NJN|1|0|G|612
1NJN|1|0|A|613
1NJN|1|0|G|614
*
1NJN|1|0|C|635
1NJN|1|0|G|636
1NJN|1|0|G|637
1NJN|1|0|A|638
1NJN|1|0|G|639
*
1NJN|1|0|C|646
1NJN|1|0|G|647
1NJN|1|0|A|648
1NJN|1|0|G|649
1NJN|1|0|U|650
1NJN|1|0|C|651
*
1NJN|1|0|G|659
1NJN|1|0|G|660
1NJN|1|0|C|661
1NJN|1|0|G|662
1NJN|1|0|G|663
1NJN|1|0|C|664
1NJN|1|0|A|665
1NJN|1|0|U|666
1NJN|1|0|U|667
1NJN|1|0|A|668
1NJN|1|0|G|669

Current chains

Chain 0

23S ribosomal RNA

Nearby chains