J4_1NJN_005

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUGC*GUUGGU*AUCGGGAG*CGAAGU

Length

24 nucleotides

Bulged bases

1NJN|1|0|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|A|1458
1NJN|1|0|U|1459
1NJN|1|0|G|1460
1NJN|1|0|C|1461
*
1NJN|1|0|G|1480
1NJN|1|0|U|1481
1NJN|1|0|U|1482
1NJN|1|0|G|1483
1NJN|1|0|G|1484
1NJN|1|0|U|1485
*
1NJN|1|0|A|1538
1NJN|1|0|U|1539
1NJN|1|0|C|1540
1NJN|1|0|G|1541
1NJN|1|0|G|1542
1NJN|1|0|G|1543
1NJN|1|0|A|1544
1NJN|1|0|G|1545
*
1NJN|1|0|C|1558
1NJN|1|0|G|1559
1NJN|1|0|A|1560
1NJN|1|0|A|1561
1NJN|1|0|G|1562
1NJN|1|0|U|1563

Current chains

Chain 0

23S ribosomal RNA

Nearby chains