J4_1NJO_001

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAGU*ACACC*GAA*UGUAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|C|308
1NJO|1|0|G|309
1NJO|1|0|A|310
1NJO|1|0|A|311
1NJO|1|0|G|312
1NJO|1|0|U|313
*
1NJO|1|0|A|326
1NJO|1|0|C|327
1NJO|1|0|A|328
1NJO|1|0|C|329
1NJO|1|0|C|330
*
1NJO|1|0|G|334
1NJO|1|0|A|335
1NJO|1|0|A|336
*
1NJO|1|0|U|348
1NJO|1|0|G|349
1NJO|1|0|U|350
1NJO|1|0|A|351
1NJO|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains