J4_1NJO_002

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAG*CGGAG*CGAGUC*GGCGGCAUUAG

Length

26 nucleotides

Bulged bases

1NJO|1|0|A|648, 1NJO|1|0|A|665, 1NJO|1|0|U|666, 1NJO|1|0|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJO_002 not in the Motif Atlas

Homologous match to J4_7A0S_003

Geometric discrepancy: 0.5691

The information below is about J4_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98739.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

1NJO|1|0|C|611
1NJO|1|0|G|612
1NJO|1|0|A|613
1NJO|1|0|G|614
*
1NJO|1|0|C|635
1NJO|1|0|G|636
1NJO|1|0|G|637
1NJO|1|0|A|638
1NJO|1|0|G|639
*
1NJO|1|0|C|646
1NJO|1|0|G|647
1NJO|1|0|A|648
1NJO|1|0|G|649
1NJO|1|0|U|650
1NJO|1|0|C|651
*
1NJO|1|0|G|659
1NJO|1|0|G|660
1NJO|1|0|C|661
1NJO|1|0|G|662
1NJO|1|0|G|663
1NJO|1|0|C|664
1NJO|1|0|A|665
1NJO|1|0|U|666
1NJO|1|0|U|667
1NJO|1|0|A|668
1NJO|1|0|G|669

Current chains

Chain 0

23S ribosomal RNA

Nearby chains