J4_1NJO_005

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUGC*GUUGGU*AUCGGGAG*CGAAGU

Length

24 nucleotides

Bulged bases

1NJO|1|0|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|A|1458
1NJO|1|0|U|1459
1NJO|1|0|G|1460
1NJO|1|0|C|1461
*
1NJO|1|0|G|1480
1NJO|1|0|U|1481
1NJO|1|0|U|1482
1NJO|1|0|G|1483
1NJO|1|0|G|1484
1NJO|1|0|U|1485
*
1NJO|1|0|A|1538
1NJO|1|0|U|1539
1NJO|1|0|C|1540
1NJO|1|0|G|1541
1NJO|1|0|G|1542
1NJO|1|0|G|1543
1NJO|1|0|A|1544
1NJO|1|0|G|1545
*
1NJO|1|0|C|1558
1NJO|1|0|G|1559
1NJO|1|0|A|1560
1NJO|1|0|A|1561
1NJO|1|0|G|1562
1NJO|1|0|U|1563

Current chains

Chain 0

23S ribosomal RNA

Nearby chains