J4_1NJO_007

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

1NJO|1|0|U|1909, 1NJO|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJO_007 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.531

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1NJO|1|0|C|1825
1NJO|1|0|U|1826
1NJO|1|0|G|1827
*
1NJO|1|0|C|1888
1NJO|1|0|G|1889
*
1NJO|1|0|C|1907
1NJO|1|0|C|1908
1NJO|1|0|U|1909
1NJO|1|0|A|1910
1NJO|1|0|A|1911
1NJO|1|0|G|1912
1NJO|1|0|G|1913
1NJO|1|0|U|1914
1NJO|1|0|A|1915
1NJO|1|0|G|1916
*
1NJO|1|0|C|1950
1NJO|1|0|G|1951
1NJO|1|0|A|1952
1NJO|1|0|A|1953
1NJO|1|0|A|1954
1NJO|1|0|G|1955

Current chains

Chain 0

23S ribosomal RNA

Nearby chains