J4_1NJP_003

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUAAA*UCG*CGCGC*GG

Length

17 nucleotides

Bulged bases

1NJP|1|0|G|1284, 1NJP|1|0|A|1285, 1NJP|1|0|U|1286, 1NJP|1|0|A|1288, 1NJP|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|C|1283
1NJP|1|0|G|1284
1NJP|1|0|A|1285
1NJP|1|0|U|1286
1NJP|1|0|A|1287
1NJP|1|0|A|1288
1NJP|1|0|A|1289
*
1NJP|1|0|U|1307
1NJP|1|0|C|1308
1NJP|1|0|G|1309
*
1NJP|1|0|C|1661
1NJP|1|0|G|1662
1NJP|1|0|C|1663
1NJP|1|0|G|1664
1NJP|1|0|C|1665
*
1NJP|1|0|G|1992
1NJP|1|0|G|1993

Current chains

Chain 0

23S ribosomal RNA

Nearby chains