J4_1NJP_005

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUGC*GUUGGU*AUCGGGAG*CGAAGU

Length

24 nucleotides

Bulged bases

1NJP|1|0|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|A|1458
1NJP|1|0|U|1459
1NJP|1|0|G|1460
1NJP|1|0|C|1461
*
1NJP|1|0|G|1480
1NJP|1|0|U|1481
1NJP|1|0|U|1482
1NJP|1|0|G|1483
1NJP|1|0|G|1484
1NJP|1|0|U|1485
*
1NJP|1|0|A|1538
1NJP|1|0|U|1539
1NJP|1|0|C|1540
1NJP|1|0|G|1541
1NJP|1|0|G|1542
1NJP|1|0|G|1543
1NJP|1|0|A|1544
1NJP|1|0|G|1545
*
1NJP|1|0|C|1558
1NJP|1|0|G|1559
1NJP|1|0|A|1560
1NJP|1|0|A|1561
1NJP|1|0|G|1562
1NJP|1|0|U|1563

Current chains

Chain 0

23S ribosomal RNA

Nearby chains