J4_1NJP_007

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

1NJP|1|0|U|1909, 1NJP|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1NJP_007 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.5315

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1NJP|1|0|C|1825
1NJP|1|0|U|1826
1NJP|1|0|G|1827
*
1NJP|1|0|C|1888
1NJP|1|0|G|1889
*
1NJP|1|0|C|1907
1NJP|1|0|C|1908
1NJP|1|0|U|1909
1NJP|1|0|A|1910
1NJP|1|0|A|1911
1NJP|1|0|G|1912
1NJP|1|0|G|1913
1NJP|1|0|U|1914
1NJP|1|0|A|1915
1NJP|1|0|G|1916
*
1NJP|1|0|C|1950
1NJP|1|0|G|1951
1NJP|1|0|A|1952
1NJP|1|0|A|1953
1NJP|1|0|A|1954
1NJP|1|0|G|1955

Current chains

Chain 0

23S ribosomal RNA

Nearby chains