J4_1NJP_008

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

1NJP|1|0|A|2265, 1NJP|1|0|A|2267, 1NJP|1|0|U|2323, 1NJP|1|0|G|2361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|C|2264
1NJP|1|0|A|2265
1NJP|1|0|A|2266
1NJP|1|0|A|2267
1NJP|1|0|G|2268
1NJP|1|0|G|2269
*
1NJP|1|0|C|2321
1NJP|1|0|U|2322
1NJP|1|0|U|2323
1NJP|1|0|G|2324
1NJP|1|0|A|2325
1NJP|1|0|C|2326
*
1NJP|1|0|G|2349
1NJP|1|0|G|2350
1NJP|1|0|G|2351
*
1NJP|1|0|C|2360
1NJP|1|0|G|2361
1NJP|1|0|G|2362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains