J4_1OB5_004
3D structure
- PDB id
- 1OB5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. aquaticus elongation factor EF-Tu complexed with the antibiotic enacyloxin IIa, a GTP analog, and Phe-tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUA(2MG)*C(M2G)C*GAG(7MG)UC(5MC)*GA
- Length
- 16 nucleotides
- Bulged bases
- 1OB5|1|B|U|8, 1OB5|1|B|U|47, 1OB5|1|B|C|48
- QA status
- Modified nucleotides: 2MG, M2G, 7MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1OB5_004 not in the Motif Atlas
- Homologous match to J4_7K98_001
- Geometric discrepancy: 0.1766
- The information below is about J4_7K98_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
1OB5|1|B|U|7
1OB5|1|B|U|8
1OB5|1|B|A|9
1OB5|1|B|2MG|10
*
1OB5|1|B|C|25
1OB5|1|B|M2G|26
1OB5|1|B|C|27
*
1OB5|1|B|G|43
1OB5|1|B|A|44
1OB5|1|B|G|45
1OB5|1|B|7MG|46
1OB5|1|B|U|47
1OB5|1|B|C|48
1OB5|1|B|5MC|49
*
1OB5|1|B|G|65
1OB5|1|B|A|66
Current chains
- Chain B
- TRANSFER-RNA, PHE
Nearby chains
- Chain A
- ELONGATION FACTOR TU
- Chain C
- ELONGATION FACTOR TU
- Chain F
- Transfer RNA; tRNA
Coloring options: