J4_1OND_006

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

1OND|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1OND_006 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.5079

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1OND|1|0|C|1825
1OND|1|0|U|1826
1OND|1|0|G|1827
*
1OND|1|0|C|1888
1OND|1|0|G|1889
*
1OND|1|0|C|1907
1OND|1|0|C|1908
1OND|1|0|U|1909
1OND|1|0|A|1910
1OND|1|0|A|1911
1OND|1|0|G|1912
1OND|1|0|G|1913
1OND|1|0|U|1914
1OND|1|0|A|1915
1OND|1|0|G|1916
*
1OND|1|0|C|1950
1OND|1|0|G|1951
1OND|1|0|A|1952
1OND|1|0|A|1953
1OND|1|0|A|1954
1OND|1|0|G|1955

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains