J4_1OND_007

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

1OND|1|0|A|2265, 1OND|1|0|A|2267, 1OND|1|0|G|2324, 1OND|1|0|G|2361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|C|2264
1OND|1|0|A|2265
1OND|1|0|A|2266
1OND|1|0|A|2267
1OND|1|0|G|2268
1OND|1|0|G|2269
*
1OND|1|0|C|2321
1OND|1|0|U|2322
1OND|1|0|U|2323
1OND|1|0|G|2324
1OND|1|0|A|2325
1OND|1|0|C|2326
*
1OND|1|0|G|2349
1OND|1|0|G|2350
1OND|1|0|G|2351
*
1OND|1|0|C|2360
1OND|1|0|G|2361
1OND|1|0|G|2362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains