3D structure

PDB id
1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
ACGAAG*CGUG*CAG*CGUACU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_1Q86_002 not in the Motif Atlas
Homologous match to J4_4V9F_002
Geometric discrepancy: 0.0279
The information below is about J4_4V9F_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_11418.1
Basepair signature
cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
1

Unit IDs

1Q86|1|A|A|302
1Q86|1|A|C|303
1Q86|1|A|G|304
1Q86|1|A|A|305
1Q86|1|A|A|306
1Q86|1|A|G|307
*
1Q86|1|A|C|323
1Q86|1|A|G|324
1Q86|1|A|U|325
1Q86|1|A|G|326
*
1Q86|1|A|C|330
1Q86|1|A|A|331
1Q86|1|A|G|332
*
1Q86|1|A|C|344
1Q86|1|A|G|345
1Q86|1|A|U|346
1Q86|1|A|A|347
1Q86|1|A|C|348
1Q86|1|A|U|349

Current chains

Chain A
23S ribosomal rna

Nearby chains

Chain E
50S ribosomal protein L4E
Chain U
50S ribosomal protein L24P

Coloring options:


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