J4_1QVF_002

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVF_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0211

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|A|302
1QVF|1|0|C|303
1QVF|1|0|G|304
1QVF|1|0|A|305
1QVF|1|0|A|306
1QVF|1|0|G|307
*
1QVF|1|0|C|323
1QVF|1|0|G|324
1QVF|1|0|U|325
1QVF|1|0|G|326
*
1QVF|1|0|C|330
1QVF|1|0|A|331
1QVF|1|0|G|332
*
1QVF|1|0|C|344
1QVF|1|0|G|345
1QVF|1|0|U|346
1QVF|1|0|A|347
1QVF|1|0|C|348
1QVF|1|0|U|349

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain S

50S ribosomal protein L24P