J4_1QVG_010

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAC*GG*CACG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1QVG_010 not in the Motif Atlas

Homologous match to J4_4V9F_010

Geometric discrepancy: 0.1231

The information below is about J4_4V9F_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_28473.1

Basepair signature

cWW-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

1QVG|1|0|G|2679
1QVG|1|0|A|2680
1QVG|1|0|A|2681
1QVG|1|0|C|2682
*
1QVG|1|0|G|2712
1QVG|1|0|G|2713
*
1QVG|1|0|C|2767
1QVG|1|0|A|2768
1QVG|1|0|C|2769
1QVG|1|0|G|2770
*
1QVG|1|0|C|2804
1QVG|1|0|A|2805
1QVG|1|0|C|2806

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain I

50S ribosomal protein L13P

Chain J

50S ribosomal protein L14P