J4_1S72_002

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1S72_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0171

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1S72|1|0|A|302
1S72|1|0|C|303
1S72|1|0|G|304
1S72|1|0|A|305
1S72|1|0|A|306
1S72|1|0|G|307
*
1S72|1|0|C|323
1S72|1|0|G|324
1S72|1|0|U|325
1S72|1|0|G|326
*
1S72|1|0|C|330
1S72|1|0|A|331
1S72|1|0|G|332
*
1S72|1|0|C|344
1S72|1|0|G|345
1S72|1|0|U|346
1S72|1|0|A|347
1S72|1|0|C|348
1S72|1|0|U|349

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P