J4_1SM1_001

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGAAGU*ACACC*GAA*UGUAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|C|308
1SM1|1|0|G|309
1SM1|1|0|A|310
1SM1|1|0|A|311
1SM1|1|0|G|312
1SM1|1|0|U|313
*
1SM1|1|0|A|326
1SM1|1|0|C|327
1SM1|1|0|A|328
1SM1|1|0|C|329
1SM1|1|0|C|330
*
1SM1|1|0|G|334
1SM1|1|0|A|335
1SM1|1|0|A|336
*
1SM1|1|0|U|348
1SM1|1|0|G|349
1SM1|1|0|U|350
1SM1|1|0|A|351
1SM1|1|0|G|352

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain S

50S RIBOSOMAL PROTEIN L24