J4_1SM1_002

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

ACGAUAAA*UCG*CGCGC*GGU

Length

19 nucleotides

Bulged bases

1SM1|1|0|G|1284, 1SM1|1|0|A|1285, 1SM1|1|0|U|1286, 1SM1|1|0|A|1288, 1SM1|1|0|C|1663, 1SM1|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|A|1282
1SM1|1|0|C|1283
1SM1|1|0|G|1284
1SM1|1|0|A|1285
1SM1|1|0|U|1286
1SM1|1|0|A|1287
1SM1|1|0|A|1288
1SM1|1|0|A|1289
*
1SM1|1|0|U|1307
1SM1|1|0|C|1308
1SM1|1|0|G|1309
*
1SM1|1|0|C|1661
1SM1|1|0|G|1662
1SM1|1|0|C|1663
1SM1|1|0|G|1664
1SM1|1|0|C|1665
*
1SM1|1|0|G|1992
1SM1|1|0|G|1993
1SM1|1|0|U|1994

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L17

Chain Q

50S RIBOSOMAL PROTEIN L22

Chain Z

50S RIBOSOMAL PROTEIN L32