J4_1SM1_004

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AUGC*GUUGG*UCGGGAG*CGAAGU

Length

22 nucleotides

Bulged bases

1SM1|1|0|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|A|1458
1SM1|1|0|U|1459
1SM1|1|0|G|1460
1SM1|1|0|C|1461
*
1SM1|1|0|G|1480
1SM1|1|0|U|1481
1SM1|1|0|U|1482
1SM1|1|0|G|1483
1SM1|1|0|G|1484
*
1SM1|1|0|U|1539
1SM1|1|0|C|1540
1SM1|1|0|G|1541
1SM1|1|0|G|1542
1SM1|1|0|G|1543
1SM1|1|0|A|1544
1SM1|1|0|G|1545
*
1SM1|1|0|C|1558
1SM1|1|0|G|1559
1SM1|1|0|A|1560
1SM1|1|0|A|1561
1SM1|1|0|G|1562
1SM1|1|0|U|1563

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains