J4_1VQ6_002

3D structure

PDB id

1VQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQ6_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0315

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1VQ6|1|0|A|302
1VQ6|1|0|C|303
1VQ6|1|0|G|304
1VQ6|1|0|A|305
1VQ6|1|0|A|306
1VQ6|1|0|G|307
*
1VQ6|1|0|C|323
1VQ6|1|0|G|324
1VQ6|1|0|U|325
1VQ6|1|0|G|326
*
1VQ6|1|0|C|330
1VQ6|1|0|A|331
1VQ6|1|0|G|332
*
1VQ6|1|0|C|344
1VQ6|1|0|G|345
1VQ6|1|0|U|346
1VQ6|1|0|A|347
1VQ6|1|0|C|348
1VQ6|1|0|U|349

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P