J4_1VQ7_002

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQ7_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.03

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1VQ7|1|0|A|302
1VQ7|1|0|C|303
1VQ7|1|0|G|304
1VQ7|1|0|A|305
1VQ7|1|0|A|306
1VQ7|1|0|G|307
*
1VQ7|1|0|C|323
1VQ7|1|0|G|324
1VQ7|1|0|U|325
1VQ7|1|0|G|326
*
1VQ7|1|0|C|330
1VQ7|1|0|A|331
1VQ7|1|0|G|332
*
1VQ7|1|0|C|344
1VQ7|1|0|G|345
1VQ7|1|0|U|346
1VQ7|1|0|A|347
1VQ7|1|0|C|348
1VQ7|1|0|U|349

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P