J4_1VQK_010

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GAAC*GG*CACG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQK_010 not in the Motif Atlas

Homologous match to J4_4V9F_010

Geometric discrepancy: 0.1318

The information below is about J4_4V9F_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_28473.1

Basepair signature

cWW-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

1VQK|1|0|G|2679
1VQK|1|0|A|2680
1VQK|1|0|A|2681
1VQK|1|0|C|2682
*
1VQK|1|0|G|2712
1VQK|1|0|G|2713
*
1VQK|1|0|C|2767
1VQK|1|0|A|2768
1VQK|1|0|C|2769
1VQK|1|0|G|2770
*
1VQK|1|0|C|2804
1VQK|1|0|A|2805
1VQK|1|0|C|2806

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P