J4_1VQO_002

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VQO_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0344

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1VQO|1|0|A|302
1VQO|1|0|C|303
1VQO|1|0|G|304
1VQO|1|0|A|305
1VQO|1|0|A|306
1VQO|1|0|G|307
*
1VQO|1|0|C|323
1VQO|1|0|G|324
1VQO|1|0|U|325
1VQO|1|0|G|326
*
1VQO|1|0|C|330
1VQO|1|0|A|331
1VQO|1|0|G|332
*
1VQO|1|0|C|344
1VQO|1|0|G|345
1VQO|1|0|U|346
1VQO|1|0|A|347
1VQO|1|0|C|348
1VQO|1|0|U|349

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P