J4_1VQP_002
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- ACGAAG*CGUG*CAG*CGUACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_1VQP_002 not in the Motif Atlas
- Homologous match to J4_4V9F_002
- Geometric discrepancy: 0.0317
- The information below is about J4_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_11418.1
- Basepair signature
- cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQP|1|0|A|302
1VQP|1|0|C|303
1VQP|1|0|G|304
1VQP|1|0|A|305
1VQP|1|0|A|306
1VQP|1|0|G|307
*
1VQP|1|0|C|323
1VQP|1|0|G|324
1VQP|1|0|U|325
1VQP|1|0|G|326
*
1VQP|1|0|C|330
1VQP|1|0|A|331
1VQP|1|0|G|332
*
1VQP|1|0|C|344
1VQP|1|0|G|345
1VQP|1|0|U|346
1VQP|1|0|A|347
1VQP|1|0|C|348
1VQP|1|0|U|349
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain T
- 50S ribosomal protein L24P
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