J4_1VTQ_001

3D structure

PDB id

1VTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAG*UGG*CAGAU(5MC)*GU

Length

15 nucleotides

Bulged bases

1VTQ|1|A|U|8, 1VTQ|1|A|U|47

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.26

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

56

Unit IDs

1VTQ|1|A|A|7
1VTQ|1|A|U|8
1VTQ|1|A|A|9
1VTQ|1|A|G|10
*
1VTQ|1|A|U|25
1VTQ|1|A|G|26
1VTQ|1|A|G|27
*
1VTQ|1|A|C|43
1VTQ|1|A|A|44
1VTQ|1|A|G|45
1VTQ|1|A|A|46
1VTQ|1|A|U|47
1VTQ|1|A|5MC|48
*
1VTQ|1|A|G|64
1VTQ|1|A|U|65

Current chains

Chain A

T-RNA-ASP

Nearby chains