J4_1VVJ_006

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VVJ_006 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0886

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

1VVJ|1|RA|C|297
1VVJ|1|RA|G|298
1VVJ|1|RA|A|299
1VVJ|1|RA|A|300
1VVJ|1|RA|G|301
*
1VVJ|1|RA|C|316
1VVJ|1|RA|G|317
1VVJ|1|RA|C|318
1VVJ|1|RA|C|319
*
1VVJ|1|RA|G|323
1VVJ|1|RA|A|324
1VVJ|1|RA|G|325
*
1VVJ|1|RA|C|337
1VVJ|1|RA|G|338
1VVJ|1|RA|U|339
1VVJ|1|RA|A|340
1VVJ|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24