J4_1VVJ_011

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VVJ_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0643

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1VVJ|1|RA|G|1772
1VVJ|1|RA|A|1773
1VVJ|1|RA|C|1774
1VVJ|1|RA|U|1775
1VVJ|1|RA|G|1776
*
1VVJ|1|RA|C|1788
1VVJ|1|RA|A|1789
1VVJ|1|RA|C|1790
1VVJ|1|RA|A|1791
1VVJ|1|RA|G|1792
*
1VVJ|1|RA|C|1827
1VVJ|1|RA|G|1828
1VVJ|1|RA|A|1829
1VVJ|1|RA|C|1830
*
1VVJ|1|RA|G|1975
1VVJ|1|RA|U|1976
1VVJ|1|RA|A|1977
1VVJ|1|RA|A|1978
1VVJ|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2