3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
1VVJ|1|YA|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_1VVJ_026 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.2273
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

1VVJ|1|YA|U|1833
1VVJ|1|YA|U|1834
1VVJ|1|YA|G|1835
*
1VVJ|1|YA|C|1905
1VVJ|1|YA|G|1906
*
1VVJ|1|YA|C|1924
1VVJ|1|YA|C|1925
1VVJ|1|YA|U|1926
1VVJ|1|YA|A|1927
1VVJ|1|YA|A|1928
1VVJ|1|YA|G|1929
1VVJ|1|YA|G|1930
1VVJ|1|YA|U|1931
1VVJ|1|YA|A|1932
1VVJ|1|YA|G|1933
*
1VVJ|1|YA|C|1967
1VVJ|1|YA|G|1968
1VVJ|1|YA|A|1969
1VVJ|1|YA|A|1970
1VVJ|1|YA|A|1971
1VVJ|1|YA|A|1972

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XV
Transfer RNA; tRNA
Chain YD
50S ribosomal protein L2

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